Category : workflow

I was tasked with implementing a HFSM with parallel states and an ability to transition to multiple parallel states in python, unfortunately I was not able to find a library that supports this. I was told to look into Camunda,I am having a difficult time understanding how parallel HFSM relate to Camunda? Is there a ..

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I have a problem with my spark dataproc workflow when i launch my spark dataproc job this works: gcloud dataproc jobs submit spark –project myproject –cluster=mycluster –region=europe-west3 –jars=gs:pathfile.jar,gs://path//depende.jar –class=it.flow –properties spark.num.executors=2,spark.executor.cores=3,spark.executor.memory=5g,spark.driver.cores=2,spark.driver.memory=10g,spark.dynamicAllocation.enabled=false,spark.executor.userClassPathFirst=true,spark.driver.userClassPathFirst=true,spark.jars.packages=com.google.cloud:google-cloud-logging:2.2.0 — 20210820 010000 000 0 000 TRY i created a dataproc workflow and i created the python to launch it through composer and it ..

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When I run snakemake -np it says: SyntaxError in line 22 of /home/snakefile: positional argument follows keyword argument It seems that it’s a problem in the input section of rule prokka because other parts workded fine. Belowe is my snakefile: configfile:"config.yml" id=config[‘id’] rule all: input: expand("{sample_id}/assembly/skesa/{sample_id}.fa", sample_id=id), directory(expand("{sample_id}/annotation/prokka/", sample_id=id)) rule skesa: output: contigs = "{sample_id}/assembly/skesa/{sample_id}.fa" ..

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I’ve installed python3 and pyyaml via codes below – name: Setup Python uses: actions/[email protected] with: python-version: 3.9 – name: Install Python dependency run: | python -m pip install –upgrade pip python -m pip install pyyaml Currently, it works fine on windows and ubuntu. However, it fails on macos Traceback (most recent call last): File "/Users/runner/work/cpeditor/cpeditor/src/Settings/genSettings.py", ..

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